Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs74392007 | chr6:122715244 | C/T | 3.69E-7 | 474 | 15.9 | 15.67 | 22.5 | KM Plot |
| THCA | rs74405138 | chr12:69605853 | T/C | 0 | 480 | 16.02 | 15 | 7.77 | KM Plot |
| THCA | rs74409831 | chr17:3479449 | G/A | 3.25E-5 | 467 | 16.63 | 14.83 | 14.48 | KM Plot |
| THCA | rs74429834 | chr5:54801136 | G/A | 0 | 482 | 15.9 | 16.22 | 5.8 | KM Plot |
| THCA | rs74431801 | chr6:24462745 | G/A | 0 | 476 | 16.57 | 14.78 | 5.1 | KM Plot |
| THCA | rs74434170 | chr11:66550451 | G/A | 0.000224 | 486 | 16.33 | 14 | 14.9 | KM Plot |
| THCA | rs74434796 | chr2:48115142 | T/A | 4.34E-8 | 489 | 15.17 | 18.9 | 8.27 | KM Plot |
| THCA | rs744381 | chr3:53909542 | T/G | 6.33E-15 | 483 | 16.07 | 16.77 | 10.35 | KM Plot |
| THCA | rs74443614 | chr2:86845509 | G/C | 0.000301 | 482 | 16.67 | 14.13 | 7.83 | KM Plot |
| THCA | rs74450812 | chr14:36079582 | G/A | 5.63E-6 | 483 | 15.97 | 16.35 | 8.33 | KM Plot |
| THCA | rs74467836 | chr2:48063241 | G/C | 1.08E-7 | 488 | 15.32 | 17.93 | 8.27 | KM Plot |
| THCA | rs74476060 | chr7:16439834 | C/T | 2.54E-9 | 488 | 15.13 | 17.72 | 17.77 | KM Plot |
| THCA | rs74478484 | chr6:24436486 | T/C | 3.94E-8 | 477 | 16.38 | 14.85 | 7.43 | KM Plot |
| THCA | rs74480106 | chr6:86357247 | AT/A | 8.27E-9 | 471 | 14.97 | 18.3 | 18.35 | KM Plot |
| THCA | rs74487858 | chr7:44330976 | G/A | 1.23E-5 | 485 | 15.87 | 16.18 | 12.7 | KM Plot |